segmentation

class trame_slicer.app.logic.segmentation.BaseEffectLogic(server: Server, slicer_app: SlicerApp, state_type: type[T], effect_type: type[U])

Bases: BaseSegmentationLogic[T], Generic[T, U], ABC

property effect: U

is_active() → bool

set_active()

class trame_slicer.app.logic.segmentation.BaseSegmentationLogic(server: Server, slicer_app: SlicerApp, state_type: type[T] | None)

Bases: BaseLogic[T], Generic[T], ABC

property active_effect

property segmentation_editor

abstractmethod set_ui(ui: SegmentEditorUI)

class trame_slicer.app.logic.segmentation.BrushEffectLogic(server: Server, slicer_app: SlicerApp, state_type: type[T], effect_type: type[U])

Bases: BaseEffectLogic[TBrush, U], Generic[TBrush, U]

set_ui(ui: SegmentEditorUI)

class trame_slicer.app.logic.segmentation.DrawEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[DrawEffectState, U], Generic[U]

property effect: SegmentationEffectDraw

set_ui(ui: SegmentEditorUI)

class trame_slicer.app.logic.segmentation.EraseEffectLogic(server: Server, slicer_app: SlicerApp): Bases: PaintEraseEffectLogic[SegmentationEffectErase]

class trame_slicer.app.logic.segmentation.IslandsEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[IslandsState, SegmentationEffectIslands]

set_effect_ui(islands_ui: IslandsEffectUI) → None

set_ui(ui: SegmentEditorUI) → None

class trame_slicer.app.logic.segmentation.LogicalOperatorsEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[LogicalOperatorsState, SegmentationEffectLogicalOperators]

set_effect_ui(logical_operators_ui: LogicalOperatorsEffectUI)

set_ui(ui: SegmentEditorUI)

class trame_slicer.app.logic.segmentation.PaintEffectLogic(server: Server, slicer_app: SlicerApp): Bases: PaintEraseEffectLogic[SegmentationEffectPaint]

class trame_slicer.app.logic.segmentation.PaintEraseEffectLogic(server: Server, slicer_app: SlicerApp, effect_type: type[U]): Bases: BrushEffectLogic[PaintEffectState, U]

class trame_slicer.app.logic.segmentation.ScissorsEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[ScissorsEffectState, U], Generic[U]

property effect: SegmentationEffectScissors

set_ui(ui: SegmentEditorUI)

class trame_slicer.app.logic.segmentation.SegmentEditLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseSegmentationLogic[SegmentEditState]

set_active_segment_id(segment_id: str)

set_ui(ui: SegmentEditUI)

show_color_dialog()

class trame_slicer.app.logic.segmentation.SegmentEditorLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseSegmentationLogic[SegmentEditorState]

on_volume_changed(volume_node: vtkMRMLVolumeNode) → None

set_ui(ui: SegmentEditorUI)

class trame_slicer.app.logic.segmentation.SegmentMaskSelectLogic(state: TypedState[DynamicSelectState], segmentation_editor: SegmentationEditor): Bases: AbstractDynamicSelectLogic[SegmentMaskModeSelectItem]

class trame_slicer.app.logic.segmentation.SmoothingEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BrushEffectLogic[SmoothingState, SegmentationEffectSmoothing]

set_effect_ui(smoothing_ui: SmoothingEffectUI)

set_joint_smoothing_factor(smoothing_factor: float)

set_kernel_size(kernel_size: float)

set_smoothing_mode(mode: SmoothingEffectMode)

set_standard_deviation(standard_deviation: float)

set_ui(ui: SegmentEditorUI)

class trame_slicer.app.logic.segmentation.ThresholdEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[ThresholdState, SegmentationEffectThreshold]

set_effect_ui(threshold_ui: ThresholdEffectUI)

set_ui(ui: SegmentEditorUI)

class trame_slicer.app.logic.segmentation.VolumeIntensityRangeMaskEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[VolumeIntensityRangeMaskState, SegmentationEffectVolumeIntensityMask]

set_ui(ui: SegmentEditorUI)

trame_slicer.app.logic.segmentation.base_segmentation_logic module

class trame_slicer.app.logic.segmentation.base_segmentation_logic.BaseSegmentationLogic(server: Server, slicer_app: SlicerApp, state_type: type[T] | None)

Bases: BaseLogic[T], Generic[T], ABC

property segmentation_editor

abstractmethod set_ui(ui: SegmentEditorUI)

property active_effect

class trame_slicer.app.logic.segmentation.base_segmentation_logic.BaseEffectLogic(server: Server, slicer_app: SlicerApp, state_type: type[T], effect_type: type[U])

Bases: BaseSegmentationLogic[T], Generic[T, U], ABC

is_active() → bool

property effect: U

set_active()

trame_slicer.app.logic.segmentation.brush_effect_logic module

class trame_slicer.app.logic.segmentation.brush_effect_logic.BrushEffectLogic(server: Server, slicer_app: SlicerApp, state_type: type[T], effect_type: type[U])

Bases: BaseEffectLogic[TBrush, U], Generic[TBrush, U]

set_ui(ui: SegmentEditorUI)

trame_slicer.app.logic.segmentation.draw_effect_logic module

class trame_slicer.app.logic.segmentation.draw_effect_logic.DrawEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[DrawEffectState, U], Generic[U]

property effect: SegmentationEffectDraw

set_ui(ui: SegmentEditorUI)

trame_slicer.app.logic.segmentation.islands_effect_logic module

class trame_slicer.app.logic.segmentation.islands_effect_logic.IslandsEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[IslandsState, SegmentationEffectIslands]

set_ui(ui: SegmentEditorUI) → None

set_effect_ui(islands_ui: IslandsEffectUI) → None

trame_slicer.app.logic.segmentation.logical_operators_effect_logic module

class trame_slicer.app.logic.segmentation.logical_operators_effect_logic.LogicalOperatorsEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[LogicalOperatorsState, SegmentationEffectLogicalOperators]

set_ui(ui: SegmentEditorUI)

set_effect_ui(logical_operators_ui: LogicalOperatorsEffectUI)

trame_slicer.app.logic.segmentation.paint_erase_effect_logic module

class trame_slicer.app.logic.segmentation.paint_erase_effect_logic.PaintEraseEffectLogic(server: Server, slicer_app: SlicerApp, effect_type: type[U]): Bases: BrushEffectLogic[PaintEffectState, U]

class trame_slicer.app.logic.segmentation.paint_erase_effect_logic.PaintEffectLogic(server: Server, slicer_app: SlicerApp): Bases: PaintEraseEffectLogic[SegmentationEffectPaint]

class trame_slicer.app.logic.segmentation.paint_erase_effect_logic.EraseEffectLogic(server: Server, slicer_app: SlicerApp): Bases: PaintEraseEffectLogic[SegmentationEffectErase]

trame_slicer.app.logic.segmentation.scissors_effect_logic module

class trame_slicer.app.logic.segmentation.scissors_effect_logic.ScissorsEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[ScissorsEffectState, U], Generic[U]

property effect: SegmentationEffectScissors

set_ui(ui: SegmentEditorUI)

trame_slicer.app.logic.segmentation.segment_edit_logic module

class trame_slicer.app.logic.segmentation.segment_edit_logic.SegmentEditLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseSegmentationLogic[SegmentEditState]

set_ui(ui: SegmentEditUI)

set_active_segment_id(segment_id: str)

show_color_dialog()

trame_slicer.app.logic.segmentation.segment_editor_logic module

class trame_slicer.app.logic.segmentation.segment_editor_logic.SegmentEditorLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseSegmentationLogic[SegmentEditorState]

set_ui(ui: SegmentEditorUI)

on_volume_changed(volume_node: vtkMRMLVolumeNode) → None

trame_slicer.app.logic.segmentation.segment_mask_select_logic module

class trame_slicer.app.logic.segmentation.segment_mask_select_logic.SegmentMaskModeSelectItem(editable_area: 'SegmentationEditableAreaMode' = <SegmentationEditableAreaMode.EVERYWHERE: 0>, segment_id: 'str' = '', segment_name: 'str' = '')

Bases: IDynamicSelectItem

editable_area: SegmentationEditableAreaMode = 0

segment_id: str = ''

segment_name: str = ''

property title: str

matches(other: SegmentMaskModeSelectItem) → bool

class trame_slicer.app.logic.segmentation.segment_mask_select_logic.SegmentMaskSelectLogic(state: TypedState[DynamicSelectState], segmentation_editor: SegmentationEditor): Bases: AbstractDynamicSelectLogic[SegmentMaskModeSelectItem]

trame_slicer.app.logic.segmentation.smoothing_effect_logic module

class trame_slicer.app.logic.segmentation.smoothing_effect_logic.SmoothingEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BrushEffectLogic[SmoothingState, SegmentationEffectSmoothing]

set_ui(ui: SegmentEditorUI)

set_effect_ui(smoothing_ui: SmoothingEffectUI)

set_smoothing_mode(mode: SmoothingEffectMode)

set_kernel_size(kernel_size: float)

set_standard_deviation(standard_deviation: float)

set_joint_smoothing_factor(smoothing_factor: float)

trame_slicer.app.logic.segmentation.threshold_effect_logic module

class trame_slicer.app.logic.segmentation.threshold_effect_logic.ThresholdEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[ThresholdState, SegmentationEffectThreshold]

set_ui(ui: SegmentEditorUI)

set_effect_ui(threshold_ui: ThresholdEffectUI)

trame_slicer.app.logic.segmentation.volume_intensity_range_mask_effect_logic module

class trame_slicer.app.logic.segmentation.volume_intensity_range_mask_effect_logic.VolumeIntensityRangeMaskEffectLogic(server: Server, slicer_app: SlicerApp)

Bases: BaseEffectLogic[VolumeIntensityRangeMaskState, SegmentationEffectVolumeIntensityMask]

set_ui(ui: SegmentEditorUI)